After separation, the head and testes ofmales were removed and purifiedtotal RNA was prepared from the remaining tissue from pools of 14–18parasites using Trizol (Invitrogen) andDNase treatment (DNA-free RNAkit, ZymoResearch).Three independent biological replicateswereperformed for both control and irradiated experimental groups. Individuallytagged libraries forRNA-seqwere prepared (TruSeqRNaseq Sample prep kit, Illumina), pooled in a singlelane, and 100-bp reads were generated using an Illumina HiSeq2000. Library preparationand Illumina sequencing were performed at theW.M. Keck Center for Comparativeand Functional Genomics. The resulting reads were mapped to the annotated S.mansoni genome6 (v5.0) and differences in gene expression were determined using CLCGenomics Workbench (CLC bio). Statistical enrichment of Gene Ontology terms wasdetermined in CLC Genomics Workbench using a hyper geometric test that issimilar to theGOstat test described in previous studies36.To examinesimilarities between proteins encoded fromirradiation-sensitive transcripts in S.mansoni and genes expressed in planarian neoblasts, we compared our schistosomedata setwith both neoblast-enriched and ‘whole’transcriptomes14,15,18,19 using standalone tBLASTn. Schistosome proteins sharing no similarity totranslated planarian mRNAs (e-value cutoff .131025) were omitted fromanalysis.
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